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Thread: pairwise sequence alignmnet algorithm without using dynamic programming

  1. #1 pairwise sequence alignmnet algorithm without using dynamic programming 
    Forum Freshman
    Join Date
    Jan 2012
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    16
    hi,

    Are there anybody design or the algorithm of pairwise sequence alignment algorithm , but not using dynamic programming because the the number of sequences is large the dynamic algorithm be very bad in terms of time.


    So, I wish to find faster way because I deal with large number of non-biological sequences.

    I have no idea how the researchers deal with this problem.
    When align sequences using dynamic programming, the matter take two or three days sometimes.
    earlier, I tried to use Swarm to optimize dynamic programming but the tries were not successful

    Please please , I hope find help .

    Thhanks in advance


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