Thread: pairwise sequence alignmnet algorithm without using dynamic programming

hi,

Are there anybody design or the algorithm of pairwise sequence alignment algorithm , but not using dynamic programming because the the number of sequences is large the dynamic algorithm be very bad in terms of time.


So, I wish to find faster way because I deal with large number of non-biological sequences.

I have no idea how the researchers deal with this problem.
When align sequences using dynamic programming, the matter take two or three days sometimes.
earlier, I tried to use Swarm to optimize dynamic programming but the tries were not successful

Please please , I hope find help .

Thhanks in advance